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Accueil > Français > Équipes > Biodiversité microbiennes et adaptations fonctionnelles (BioADAPT) > Publications

2003-2010

par DavidB - publié le , mis à jour le

2010

BORREL G., LEHOURS A. C., BARDOT C., BAILLY X., FONTY G. (2010)- Members of Candidate Divisions OP11, OD1 and SR1 are widespread along the water column of the meromictic Lake Pavin (France). Archives of Microbiology, 192:559-567.

JOBARD M., RASCONI S., SIME-NGANDO T. (2010)- Diversity and functions of microscopic fungi : a missing component in pelagic food webs, Aquatic Sciences, 72 : 255-268.

LEHOURS A. C., RABIET M., MOREL-DESROSIERS N., MOREL J.-P., JOUVE L., ARBEILLE B., MAILHOT G., FONTY G. (2010)- Ferric iron reduction by fermentative strain BS2 isolated from an iron-rich anoxic environment (Lake Pavin, France). Geomicrobiology Journal, 27:714-722.

PRADEEP RAM A.S., SIME-NGANDO T. (2010)- Resources drive trade-off between viral lifestyles in the plankton : evidence from freshwater microbial microcosms, Environmental Microbiology, 12 : 467-479.

LEHOURS A. C., COTTRELL M., DAHAN O., KIRCHMAN D., JEANTHON C. (2010)- Summer distribution and diversity of aerobic anoxygenic phototrophic bacteria in the Mediterranean Sea in relation to environmental variables. FEMS Microbiology Ecology, 74 : 397-409.

PRADEEP RAM A.S., NISHIMURA Y., TOMARU Y., NAGASAKI K., NAGATA T. (2010)- Seasonal variation in viral induced-mortality of bacterioplankton in the water column of a large mesotrophic lake (Lake Biwa, Japan). Aquatic Microbial Ecology, 58 : 249-259.

LEFÈVRE E., JOBARD M., VENISSE J.C., BEC A., KAGAMI M., AMBLARD C., SIME-NGANDO T. (2010)- Development of a real-time PCR essay for quantitative assessment of uncultured freshwater zoosporic fungi. Journal of Microbiological Methods, 81 : 69-76.

PRADEEP RAM A. S., ARNOUS B., DANGER M., CARRIAS J. F., LACROIX G., SIME-NGANDO T. (2010)- High and differential viral infection rates within bacterial ‘morphopopulations’ in a shallow sand pit lake (Lac de Créteil - France). FEMS Microbiology Ecology, 74:83-92.

GACHON C., SIME-NGANDO T., STRITTMATTER M., CHAMBOUVET A., HOON KIM G. (2010)- Algal diseases : Spotlight on a black box. Trends in Plant Science, 15 : 633-640.

LEPERE C., MASQUELIER S., MANGOT JF., DEBROAS D., DOMAIZON I. (2010)- Vertical structure of small eukaryotes in three lakes that differ by their trophic status : a quantitative approach. ISME Journal, 4 : 1509-1519.

2009

RASCONI S, JOBARD M, SIME-NGANDO T (2009) : Fungal parasitism of phytoplankton prokaryotes in the productive Lake Aydat (Massif Central, France). Applied & Environmental Microbiology, Cover Volume 75, Issue 8

RASCONI S, JOBARD M, JOUVE L, SIME-NGANDO T (2009) : Use of calcofluor white for detection, identification and quantification of phytoplanktonic fungal parasites. Applied & Environmental Microbiology 75 : 2545-2553

PRADEEP RAM AS, SABART M, LATOUR D, SIME-NGANDO T (2009) : Low effect of viruses on bacteria in deep anoxic water and sediment of a productive freshwater reservoir (Lake Grangent, France). Aquatic Microbial Ecology 55 : 255-265

PERSONNIC S, DOMAIZON I, SIME-NGANDO T, JACQUET S (2009) : Seasonal variations of microbial abundances and virus- vs flagellate-induced mortality of picoplankton in three peri-alpine lakes. Journal of Plankton Research, 31 : 1161-1177

CARRIAS JF & SIME-NGANDO T (2009) : Bactteria attached to surfaces. In : Encyclopedia of inland waters, Volume 3, pp. 182-192, Elsevier, Oxford, UK

SIME-NGANDO T & COLOMBET J (2009) : Virus et prophages dans les écosystèmes aquatiques. Canadian Journal of Microbiology 55 : 95-109

ELLOUMI J, CARRIAS JF, AYADI H, SIME-NGANDO T, BOUAÏN A (2009) : Community structure of the planktonic halophiles in the solar saltern of Sfax, Tunisia. Estuairine Coastal and Shelf Science 81 : 19-26

CUC D, BOUGUET-BONNET S, MOREL-DESROSIERS N, MOREL JP, MUTZENHARDT P, CANET D (2009) : Location of a metallic cation complexed in a calixarene cavity as determined by calixarene 13C spin relaxation. Application to cesium and thallium complexed by p-sulphonatocalix[4]arene in water. Journal of Physical Chemistry B 113 : 3499-3503.

ROTENBERG B, MOREL JP, MARRY V, TURQ P, MOREL-DESROSIERS N (2009) : On the driving force of cation exchange in clays : insights from combined microcalorimetry experiments and molecular simulation. Geochimica et Cosmochimica Acta 73 : 4034-4044.

MOREL JP, MARMIER N, HUREL C, MOREL-DESROSIERS N (2009) : The acid-base properties of the alumina surface. Influence of the titration procedures on the microcalorimetric measurements. Journal of Colloid and Interface Science 338 : 10-15.

CUC D, BOUGUET-BONNET S, MOREL-DESROSIERS N, MOREL JP, MUTZENHARDT P, CANET D (2009) : Behavior of cesium and thallium cations inside a calixarene cavity as probed by nuclear spin relaxation. Evidence of cation-pi interactions in water. Journal of Physical Chemistry B 113 : 10800-10807.

MOREL-DESROSIERS N (2009) : Aquatic chemistry. Chemistry World 6 : 36.

2008

BETTAREL Y, ARFI R, BOUVIER T, BOUVY M, BRIAND E, COLOMBET J, CORBIN O, SIME-NGANDO T (2008) : Virioplankton distribution and activity in a tropical eutrophicated Bay. Estuairine Coastal and Shelf Science 80 : 425-429

Lehours A-C., C Bardot., P-F Pelisson., A Guedon., S Pesce., G Demeure., D Sargos., G Fonty. Successional changes in bacterial community assemblages in response to anoxia in the hypolimnion of a eutrophic lake. Aquatic Microbial Ecology, 54 : 71-82.

Lehours A-C., I Batisson., A Guedon., G Mailhot. and G Fonty. Diversity of culturable bacteria from the anaerobic zone of the meromictic lake Pavin able to perform dissimilatory iron reduction in different in vitro conditions. Geomicrobiology Journal (In press).

GLEASON FH, KAGAMI M, LEFEVRE E, SIME-NGANDO T (2008) : The ecology of chytrids in aquatic ecosystems : roles in food web dynamics. Fungal Biology Reviews 22 : 17-25

LEFEVRE E, ROUSSEL B, AMBLARD C, SIME-NGANDO T (2008) : The molecular diversity of freshwater picoeukaryotes reveals high occurrence of putative parasitoids in the plankton. PloS One 3, 2324-2333

LEPAGE P, COLOMBET J, MARTEAU P, SIME-NGANDO T, DORE J, LECLERC MC (2008) : Dysbiosis in Inflammatory Bowel Disease : a role for bacteriophages ? GUT 57 : 424-425

PRADEEP RAM AS, SIME-NGANDO T (2008) : Functional responses of prokaryotes and viruses to grazer effects and nutrient additions in freshwater microcosms. The ISME Journal 2 : 498-509

CISSOKO M, DESNUES A, BOUVY M, SIME-NGANDO T, VERLING E, BETTAREL Y (2008) : Effects of freshwater and seawater mixing on virio- and bacterioplankton in a tropical estuary. Freshwater Biology 53 : 1154-1162

SIME-NGANDO T, COLOMBET J, PERSONNIC S, DOMAIZON I, DORIGO U, PERNEY P, HUSTACHE JC, VIOLLIER E, JACQUET S (2008) : Short-term variations in abundances and potential activities of viruses, bacteria and nanoprotists in Lake Bourget. Ecological Research 23 : 851-861

PISSON J, MOREL JP, MOREL-DESROSIERS N, TAVIOT-GUEHO C, MALFREYT P (2008) : Molecular modelling of the structure and dynamics of the interlayer species of ZnAlCl layered double hydroxide. Journal of Physical Chemistry B 112 : 7856-7864

KOUSSOROPLIS A., LEMARCHAND C., BEC A., DESVILETTES C., AMBLARD C., FOURNIER C., BERNY P. & BOURDIER G. (2008). From aquatic to terrestrial food webs : decrease of the Docosahexaenoic acid / Linoleic Acid ratio. Lipids, 43 : 461 – 466

2007

COLOMBET J, ROBIN A, LAVIE L, BETTAREL Y, CAUCHIE HM, SIME-NGANDO T (2007) : Virioplankton ‘pegylation’ : use of PEG (polyethylene glycol) to concentrate and purify viruses in pelagic ecosystems. Journal of Microbiological Methods, 71 : 212-219

JACQUET S, DOMAIZON I, PERSONNIC S, SIME-NGANDO T (2007) : Do small grazers influence virus-induced mortality of bacteria in Lake Bourget (France) ? Fundamental & Applied Limnology 170 : 125-132

LEFEVRE E, BARDOT C, NOËL C, CARRIAS JF, VISCOGLIOSI E, AMBLARD C, SIME-NGANDO T* (2007) : Unveiling fungal zooflagellates as members of freshwater picoeukaryotes : evidence from a molecular diversity study in a deep meromictic lake. Environmental Microbiology 9 : 61-71

JUGNIA LB, SIME-NGANDO T, DEVAUX J. (2007) : Relationship between bacterial and primary production in a newly filled reservoir : temporal variability over 2 consecutive years. Ecological Research 22 : 321-330

ALAOUI MHAMDI B, AZZOUZI A, ALAOUI MHAMDI M, SIME-NGANDO T (2007) : Dynamics of the relative nitrogen and phosphorus concentrations in a reservoir situated in a semi-arid zone (Sahela, Morocco). Water Resources Management 21 : 983-995

COLOMBET J, SIME-NGANDO T, CAUCHIE HM, FONTY G, HOFFMANN L, DEMEURE G (2006) : Depth-related gradients of viral activity in Lake Pavin. Applied & Environmental Microbiology 72 : 4440-4445

ELLOUMI J, CARRIAS JF, AYADI H, SIME-NGANDO T, BOUKHRIS M, BOUAÏN A. (2006) : Composition and distribution of planktonic ciliates from ponds of differents salinity in the solar saltwork of Sfax, Tunisia. Estuairine Coastal & Shelf Sciences 67 : 21-29

Fonty G., K.N Joblin, M Chavarot, R. Roux., G. Naylor and F. Michallon 2007. : Establisment and development of ruminal hydrogenotrophs in methanogen-free lambs. Appl Environ Microbiol,73 :6391-6403.

LEMARCHAND C., AMBLARD C., SOUCHON Y. & BERNY P. (2007). Organochlorine pesticides and PCBs contents in scats from actual expanding French Otter (Lutra lutra) populations. Water, air and Soil Pollution, 186 : 55 – 62

LE JEUNE A-H, CHARPIN M, SARGOS D, DELUCHAT V, LENAIN J-F, BRIAND J-F, BAUDU M, AMBLARD C. (2007) - Planktonic microbial community responses to added copper. Aquat. Toxicol. 83 : 223-237

CUC D., CANET D., MOREL J.P., MOREL-DESROSIERS N., MUTZENHARDT P. (2007) 133Cs Diffusion NMR spectroscopy : a tool for probing metal cation- interactions in water. ChemPhysChem., 8, 643-645

MOREL J.P., MARRY V., TURQ P., MOREL-DESROSIERS N. (2007) Effect of temperature on the retention of Cs+ by Na-montmorillonite : microcalorimetric investigation. J. Mater. Chem., 17, 2812-2817

GHOUFI A., ARCHIREL P., MOREL J.P., MOREL-DESROSIERS N., BOUTIN A., MALFREYT P. (2007) Methodology for the calculation of the potential of mean complex in water. ChemPhysChem, 8, 1648-1656

GHOUFI A., PISON L., MOREL J.P., MOREL-DESROSIERS N., BONAL C., MALFREYT P. (2007) Computational and experimental investigations of supramolecular assemblies of p-sulfonatocalix[4]arene organized by weak forces, J. Phys. Chem. B, 111, 11478-11485

Varloud M. A. Roussel, A. Guyonvarch, G. Fonty, and V. Julliand. 2007. Postprandial evolution of some biotic and abiotic characteristics of the gastric ecosystem of horses fed a pelleted concentrate meal. J Anim Sci, 85 : 2508-2516.

Lehours A-C., P. Evans, C. Bardot, K. Joblin, and G. Fonty. 2007. Phylogenetic diversity of Archaea and Bacteria in the anoxic zone of a meromictic lake (lake Pavin, France). Appl. Environ Microbiol, 73:2016-2019.

2006

ALAOUI MHAMDI B, AZZOUZI A, ALAOUI MHAMDI M, SIME-NGANDO T (2006) - Dynamics of the relative nitrogen and phosphorus concentrations in a reservoir situated in a semi-arid zone (Sahela, Morocco). Water Res. Management., sous presse

BETTAREL Y, BOUVY M, DUMONT C, SIME-NGANDO T (2006) - Virus-bacteria interactions in waters and sediments of West African inland aquatic systems. Appl. Environ. Microbiol., 72 : 5274-5282

CHARRIER M., FONTY G., GAILLARD-MARTINIE B., AINOUCHE K., ANDANT G. (2006) - Isolation and characterisation of predominant bacteria from the intestine two edible snails, Helix pomatia and Cornus aspersum (Gastropoda :Pulmonata). Biol. Res. (In press).

COLOMBET J, SIME-NGANDO T*, CAUCHIE HM, FONTY G, HOFFMANN L, DEMEURE G (2006) : Depth-related gradients of viral activity in Lake Pavin. Appl. Environ. Microbiol. 72 : 4440-4445.

ELLOUMI J, CARRIAS JF, AYADI H, SIME-NGANDO T, BOUKHRIS M, BOUAÏN A. (2006) : Composition and distribution of planktonic ciliates from ponds of differents salinity in the solar saltwork of Sfax, Tunisia. Estuairine Coastal & Shelf Sciences, 67 : 21-29

FILIPPINI M, BUESING N, BETTAREL Y, SIME-NGANDO T, GESSNER MO (2006) : The infection paradox : high abundance but low impact of freshwater benthic viruses. Appl. Environ. Microbiol., 72 : 4893-4898

FONTY G., CHAUCHEYRAS-DURAND F. (2006) - Effects and modes of action of live yeasts in the rumen. Biologica (In press).

JUGNIA LB, SIME-NGANDO T, GILBERT D (2006) : Dynamics and estimates of growth and loss rates of bacterioplankton in a temperate freshwater system. FEMS Microbiol. Ecol., 58 : 23-32

LEFEVRE E., BARDOT C., NOËL C., CARRIAS JF, VISCOGLIOSI E., AMBLARD C., SIME-NGANDO T. (2006) - Unveiling fungal zooflagellates as members of freshwater picoeukaryotes : evidence from a molecular diversity study in a deep meromictic lake. Environ. Microbiol ., in press.

LE JEUNE A-H, CHARPIN M, DELUCHAT V, LENAIN J-F, BRIAND J-F, BAUDU M, AMBLARD CH. (2006) - Effect of copper sulphate treatment on natural phytoplanktonic communities. Aquat. Toxicol. (in press).

LEHOURS A-C., EVANS P., BARDOT C., JOBLIN K. AND FONTY G. Phylogenetic diversity of Archaea and Bacteria in the anoxic zone of a meromictic lake ( lake Pavin, France). Appl. Environ. Microbiol. (Accepté avec modifications mineures)

LEMARCHAND C, JARDILLIER L, CARRIAS JF, RICHARDOT M, DEBROAS D, SIME-NGANDO T, AMBLARD C. (2006) - Community composition and activity of prokaryotes associated to detrital particles in two contrasting lake ecosystems FEMS Microb. Ecol, 57:442-451

TRABALZA-MARINICCI M., PONCET CL., DELVAL E., FONTY G.. (2006) - Evaluation of techniques to detach particle-associated microorganismms from rumen contents. Anim. Feed Sci. technol.,125,1-16.

VARLOUD M. ROUSSEL A., GUYONVARCH A., FONTY G., AND JULLIAND V. (2006) - Postprandial evolution of some biotic and abiotic characteristics of the gastric ecosystem of horses fed a pelleted concentrate meal. J. Anim. Sci. ( in press).

2005

BETTAREL Y., SIME-NGANDO T., AMBLARD C., BOUVY M. (2005) - Low Consumption of Virus-Sized Particles by Heterotrophic Nanoflagellates in Two Lakes of the French Massif Central. Aquat. Microb. Ecol., 39 : 205-209

CHAUCHEYRAS-DURAND F., MASSEGLIA S., FONTY G. (2005) - Effect of the microbial feed additive Saccharomyces cerevisiae CNCM I-1077 on protein and peptide degrading activities of rumen bacteria grown in vitro. Cur. Microbiol, 50 : 96-101.

HORNAK K., MASIN M., JEZBERA J., BETTAREL Y., NEDOMA J., SIME-NGANDO T. & SIMEK K. (2005) - Effects of decreased resource availability, protozoan grazing and viral impact on the structure of bacterioplankton assemblage in a canyon-shaped reservoir. FEMS Microbiol. Ecol., 52 : 315-327

JACQUET S., DOMAIZON I., PERSONNIC S., PRADEEP RAM A.S., HEDAL M. & SIME-NGANDO T. (2005) - Estimates of protozoan- and viral-mediated mortality of bacterioplankton in Lake Bourget (France). Freshwater Biol., 50 : 627-645

JARDILLIER L., BETTAREL Y., RICHARDOT M., BARDOT C., AMBLARD C., SIME-NGANDO T. AND DEBROAS D. (2005) - Effects of Viruses and Predators on Prokaryotic Community Composition. Microbial. Ecol. 50, 557-569.

JARDILLIER L., BOUCHER D., PERSONNIC S., JACQUET S., THÉNOT A., SARGOS D., AMBLARD CH. AND DEBROAS D. (2005) - Relative importance of nutrients and mortality factors on prokaryotic community composition in two lakes of different trophic status : Microcosm experiments. FEMS Microbiol. Ecol. 53, 429-443.

LEFEVRE E, CARRIAS JF, BARDOT C, SIME-NGANDO T & AMBLARD C. (2005) - A preliminary study of heterotrophic picoflagellates using oligonucleotidic probes in Lake Pavin. Hydrobiologia, 551 : 61-67

LEFRANC M., THÉNOT A., LEPÈRE C., DEBROAS D. (2005) - Genetic diversity of small eukaryotes in lakes differing by their trophic status. Appl. Environ. Microbiol. 71, 5935-5942.

LEHOURS A.C., BARDOT C., THÉNOT A., DEBROAS D., FONTY G.. (2005) - First investigation of anaerobic microbial communities in lake Pavin : the unique meromictic lake in France. Appl. Environ. Microbiol.,71 : 7389-7400.

PRADEEP RAM AS, BOUCHER D., SIME-NGANDO T., DEBROAS D., ROMAGOUX JC (2005) - Phage bacteriolysis, protistan bacterivory potential, and bacterial production in a freshwater reservoir : coupling with temperature. Microbial. Ecol., 50, 64-72

SIME-NGANDO T & PRADEEP RAM AS (2005) - Grazer effects on prokaryotes and viruses in a freshwater microcosm experiment. Aquat. Microb. Ecol., 41:115-124

TOUMI N., AYADI H., ABID O., CARRIAS J-F., SIME-NGANDO T., BOUKHRIS M. & BOUAIN A. (2005) - Zooplankton distribution in four ponds of different salinity : a seasonal study in the solar salterns of Sfax (Tunisia). Hydrobiologia 534 : 1-9.

ZEBAZE TSH, NJINE T., KEMKA N., NOLA M., FOTO MS, MONKIEDJE A., NIYITEGEKA S., SIME-NGANDO T., JUGNIA LB (2005) - Variations spatiales et temporelles de la richesse et de l’abondance des rotifers (Brachionidae et Trichocercidae) et des cladocères dans un petit lac artificial eutrophe situé en zone tropicale. Revue des Sciences de l’Eau, 18 : 485-505

2004

AYADI H., ABID O., ELLOUMI J., BOUAÏN A. & SIME-NGANDO T. (2004) - Structure of the phytoplankton communities in two lagoons of different salinity in the Sfax Saltern (Tunisia). J. Plankton Res. 26 : 669-679

BETTAREL Y., SIME-NGANDO T., AMBLARD C., & DOLAN J. (2004) - Viral activity in two contrasting lake ecosystems. Appl. Environ Microbiol. 70 : 2941-2951

EUGENE M., ARCHIMEDE H., MICHALET-DOREAU B, FONTY G. (2004) - Effects of defaunation on microbial activities in the rumen of rams consuming mixed diet (fresh Digitaria decumbens grass and concentrate). Anim. Res : 53 : 187-200.

JARDILLIER L., M. BASSET, I. DOMAIZON, A. BELAN, C. AMBLARD, M. RICHARDOT, D. DEBROAS (2004) - Bottom-up and top-down control of the bacterial community composition in the euphotic zone of a reservoir. Aquat. Microb. Ecol. 35, 259-273.

MALLET C., G. FONTY, C. DESVILETTES , G. BOURDIER. AND DEBROAS D. (2004) - Microbial population dynamics in the sediments of a eutrophic lake (aydat, france) and characterisation of some heterotrophic bacterial isolates. Microbial. Ecol., 48 : 66-77.

2003

BENNEGADI N., FONTY G., MILLET L., GIDENNE T., LICOIS D. (2003) - Effects of age and dietary fibre level on caecal microbial communities of conventional and specific pathogen-free rabbits. Microbiol. Ecol. Health Dis.,15 : 23-32

BETTAREL Y., AMBLARD C., SIME-NGANDO T., CARRIAS JF, SARGOS D., GARABETIAN F. & LAVANDIER P. (2003) - Viral lysis, flagellate grazing potential and bacterial production in Lake Pavin. Microbial Ecol, 45 : 119-127

BETTAREL Y., SIME-NGANDO T., AMBLARD C., CARRIAS JF & PORTELLI C. (2003) - Virioplankton and microbial communities in aquatic systems : a seasonal study in two lakes of differing trophy. Freshwater Biol 48 : 810-822

SIME-NGANDO T., BETTAREL Y., CHARTOGNE C. & SEAN K. (2003) - The imprint of wild viruses on freshwater microbial ecology. Rec. Res. Develop. Microbiol 7 : 481-497

TADONLEKE R., THOUVENOT A., GILBERT D., SIME-NGANDO T., DEBROAS D. , DEVAUX J. (2003) - Size-Fractionated Phytoplankton and Relationships with Metazooplankton in a Newly Flooded Reservoir . Inter. Rev. Hydrobiol. 88, 614-634.